Scientific program

General Conference Schedule

Preliminary list of lectures:

Genomics of eukaryotes

• Igor Grigoryev (DOE Joint Genome Institute, USA)
  Fungal genomics for Energy and Environment
• Konstantin Krutovsky (Georg-August-University of Göttingen, Germany)
  Targeted and complete genome de novo sequencing in conifer trees with giant and complex genomes
• Matthias Meyer (Max Planck Institute for Evolutionary Anthropology, Germany)
  Archaic Genomes
• Ancha Baranova (George Mason University, USA)
  We know it all: what is next? Protein-centric analysis of publicly available PPI data for functionally diverse KCTD family as an example
• Alexandr Graphodatsky (Institute for Molecular and Cellular Bbiology SB RAS, Novosibirsk)
  Chromosomal organization of mammalian genomes
• Anna Druzhkova (Institute for Molecular and Cellular Biology SB RAS, Novosibirsk)
  Analysis of equid fossil DNA from the Denisova cave using throughput sequencing platforms
• Alexey Moskalev (Institute of Biology of the Komi Science Centre of the Ural, Syktyvkar)
  Transcriptome сhange of adult Drosophila melanogaster after exposure to gamma-radiation, 2,3,7,8-tetrachlorodibenzo-p-dioxin, toluene and formaldehyde
• Fatima Smagulova (European University of Brittany, France)
  Genome wide mapping of meiotic recombination hotspots in mice
• Ekaterina Loseva (Institute of Сhemical Biology and Fundamental  Medicine of SB RAS, Novosibirsk)
  Characterization of genomic DNA fragments generated during apoptosis
• Vladimir Trifonov (Institute for Molecular and Cellular Biology SB RAS, Novosibirsk)
  The study of reptile sex chromosome evolution by high-throughput sequencing of chromosome specific libraries
• Victoria Mironova (Institute of Cytology and Genetics, Novosibirsk)
  Ауксин-зависимые изменения транскриптома корней  Arabidopsis thaliana L.

Metagenomics

• Ludmila Chistoserdova (University of Washington, USA)
  Using Metagenomics for understanding functionality of complex microbial communities
• Evgeny Andronov (All-Russia Research Institute for Agricultural Microbiology, St.Petersburg)
  New approaches for analyses of soil microbiome
• AnnaPopenko (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  Special traits of russian gut microbiome: functional analysis and cross-national comparative study
• Alexandr Zelenin (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  Структура бактериального сообщества пищеварительного тракта криптобиотической хирономиды Polypedilum vanderplanki с позиции метагеномного анализа.
• Vitaly Kadnikov (Center "Bioengineering" RAS, Moscow)
  Метагеномный анализ микробного сообщества глубинного подземного термального местообитания в Западной Сибири.

Genomics of bacteria and viruses

• Nikolay Ravin (Center "Bioengineering" RAS, Moscow)
  Sequencing of genomes of extremophilic microorganisms representing new phylogenetic lineages
• Konstantin Miroshnikov  (Institute of bioorganic chemistry RAS, Moscow)
  Bacteriophage genomics: Prospects of the NexGen sequencing approach
• Olga Averina  (Vavilov Institute of General Genetics RAS, Moscow)
  Complete genome sequence of Bifidobacterium longum GT15: comparative genomic analysis, global regulatory genes, unique genes
• Alexandr Manolov (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  De Novo assembly and comparative analysis of the genome of the bacteria P. stutzeri KOS6 isolated from hydrocarbon sludge
• Ivan Bodoev (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  Секвенирование и de-novo сборка геномной ДНК штамма Neisseria gonorrhoeae k51.05
• Vladislav Babenko (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  A combination of different approaches for improve sequencing assembly bacterial genome,for example Spiroplasma melliferum

NGS and data analysis

• Alla Lapidus (Dobzhansky Center for Genome Bioinformatics, SPbU , Russia)
  Genome assembly and finishing - why hight quality references are needed
• Marta Matvienko (CLC Bio, USA)
  Sequencing sample prep and data assembly methods: 15 years of accelerated evolution
• Marie-Theres Gansauge (Max Planck Institute for Evolutionary Anthropology, Germany)
  Methods for ancient DNA sequencing
• Andrey Przhibelskiy (St Petersburg Academic University, St.Petersburg)
  Genome draft assembly algorithms: from the very beginning till present-day problems
• Elena Kostryukova (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  Effects of sample-preparation stage on results of metagenomic analysis after shotgun sequencing
• Igor Morozov (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)
  The importance of library fragments size for the quality of emulsion PCR dependent MPSS data
• Dmitry Shtokalo (A.P.Ershov Institute of Informatics Systems SB RAS, Novosibirsk)
  Very long intergenic non-coding RNA (vlincRNA) discovery in NGS data
• Olga Golosova  (NCIT "UNIPRO", Novosibirsk)
  Analysis of Next-Generation Sequencing Data with UGENE
• Fedor Kolpakov (Design Technological Institute of Digital Techniques of SB RAS, Novosibirsk)
  BioUML – software platform for analysis of next generation sequencing data using collaborative and reproducible research

Medical genomics

• Vadim Stepanov (Research Institute of Medical Genetics SB RAMS, Tomsk)
  High-throughput SNP genotyping: decanalization of immune response during human dispersal
• Alexandr Tyacht (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
  Temporal evolution of gut microbiota composition during cancer treatment in pediatric patients as identitified by metagenomic analysis
• Dmitry Baryakin (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)
  Small non-coding RNAs of human blood plasma
• Anna Savelyeva (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)
  Ribonucleic acid composition of extracellular vesicles from healthy donor's blood
• Ekaterina Trifonova (Research Institute of Medical Genetics SB RAMS, Tomsk)
  Identification of the pathophysiological mechanisms of preeclampsia by genome-wide expression analysis
• Maria Nazarenko (Research Institute of Medical Genetics SB RAMS, Tomsk)
  Microarray analysis of the DNA methylation profile of vascular tissues and whole blood from patients with atherosclerosis
• Olga Saik  (Institute of Cytology and Genetics of SB RAS, Novosibirsk)
  Analysis of RNASeq digital gene expression for expanding disease “associome” reconstructed based on information stored in databases